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CSE IGERT PUBLICATIONS

2006

N. Bagheri, J. Stelling, and F. Doyle. Circadian phase entrainment via nonlinear model predictive control. International Journal of Robust and Nonlinear Control, in press.

N. Bagheri, J. Stelling, and F. Doyle. Quantitative Performance Metrics for Robustness in Circadian Rhythms. Bioinformatics 23(3):358-364.

F. Doyle, R. Gunawan, N. Bagheri, H. Mirsky, and T. To. Circadian Rhythm: A Natural, Robust, Multi-scale Control System. Computers and Chemical Engineering, 30:1700-1711, 2006.

G. Mathew, I. Mezic, S. Grivopoulos, U.Vaidya, and L. Petzold. Optimal Control of Mixing in Stokes Fluid Flows. Journal of Fluid Mechanics, 2006.

2005

G. Mathew, I. Mezic, and L. Petzold. A Multiscale Measure for Mixing. Physics D, 211:23-46.

S. Hildebrandt, D. Raden, E. Bell, A. Robinson, and F. Doyle. Modeling the Unfolded Protein Response in Saccharomyces cerevisiae. FOSBE Proceeding (Aug 2005), 317-320.

D. Raden, S. Hildebrandt, P.Xu, E. Bell, F. Doyle, A. Robinson. Analysis of Cellular Response to Protein Overexpression. IEE Proc. Sys. Biol., 152 (4):285-289, 2005.

2004

W. Guo, S. Lampoudi, J. Shea. Temperature Dependence of the Free Energy Landscape of the src-SH3 Protein Domain. Proteins, 2004 May, 55(2):395-406.

G. Mathew, I. Mezic, R. Serban, and L. Petzold, Optimization of Mixing in an Active Micromixing Device. Proceedings of Nanotechnology Conference and Trade Show.

2003

W. Guo, S. Lampoudi, J. Shea. Posttransition State Desolvation of the Hydrophobic Core of the src-SH3 Protein Domain. J Biophys. 2003 July; 85(1):61-9.